Source code for weaver.processes.builtin.file2string_array

#!/usr/bin/env python
Transforms a file input into JSON file containing an array of file references as value.
import argparse
import json
import logging
import os
import sys

[docs]CUR_DIR = os.path.abspath(os.path.dirname(__file__))
[docs]PACKAGE_NAME = os.path.split(os.path.splitext(__file__)[0])[-1]
# setup logger since it is not run from the main 'weaver' app
[docs]LOGGER = logging.getLogger(__name__)
LOGGER.addHandler(logging.StreamHandler(sys.stdout)) LOGGER.setLevel(logging.INFO) # process details __version__ = "1.2" __title__ = "File to String-Array" __abstract__ = __doc__ # NOTE: '__doc__' is fetched directly, this is mostly to be informative
[docs]OUTPUT_CWL_JSON = "cwl.output.json"
[docs]def process(input_file, output_dir): # type: (argparse.FileType, str) -> None"Got arguments: input_file=%s output_dir=%s", input_file, output_dir) output_data = {"output": [input_file]} with open(os.path.join(output_dir, OUTPUT_CWL_JSON), mode="w", encoding="utf-8") as file: return json.dump(output_data, file)
[docs]def main(*args): # type: (*str) -> None"Parsing inputs of '%s' process.", PACKAGE_NAME) parser = argparse.ArgumentParser(description=__doc__) parser.add_argument("-i", help="CWL File") parser.add_argument( "-o", metavar="outdir", required=True, help="Output directory of the retrieved NetCDF files extracted by name from the JSON file.", ) ns = parser.parse_args(*args) sys.exit(process(ns.i, ns.o))
if __name__ == "__main__": main()