Source code for weaver.processes.wps_process_base

from abc import abstractmethod
from time import sleep
from typing import TYPE_CHECKING

from pyramid.httpexceptions import HTTPBadGateway
from pyramid.settings import asbool
from pyramid_celery import celery_app as app

from weaver.formats import CONTENT_TYPE_APP_JSON
from weaver.utils import get_cookie_headers, get_settings, request_extra
from weaver.wps.utils import get_wps_output_dir, get_wps_output_url

    from weaver.typedefs import CWL_RuntimeInput
    from typing import Dict
    from import WPSRequest

[docs]class WpsProcessInterface(object): """ Common interface for WpsProcess to be used is cwl jobs """ @abstractmethod
[docs] def execute(self, workflow_inputs, # type: Dict[str, CWL_RuntimeInput] out_dir, # type: str expected_outputs, # type: Dict[str, str] ): """ Execute a remote process using the given inputs. The function is expected to monitor the process and update the status. Retrieve the expected outputs and store them in the ``out_dir``. :param workflow_inputs: `CWL` job dict :param out_dir: directory where the outputs must be written :param expected_outputs: expected value outputs as `{'id': 'value'}` """ raise NotImplementedError
def __init__(self, request): # type: (WPSRequest) -> None self.request = request if self.request.http_request: self.cookies = get_cookie_headers(self.request.http_request.headers) else: self.cookies = {} self.headers = {"Accept": CONTENT_TYPE_APP_JSON, "Content-Type": CONTENT_TYPE_APP_JSON} self.settings = get_settings(app) self.verify = asbool(self.settings.get("weaver.ows_proxy_ssl_verify", True))
[docs] def make_request(self, method, url, retry, status_code_mock=None, **kwargs): response = request_extra(method, url=url, settings=self.settings, headers=self.headers, cookies=self.cookies, verify=self.verify, **kwargs) # TODO: Remove patch for Geomatys unreliable server if response.status_code == HTTPBadGateway.code and retry: sleep(10) response = self.make_request(method, url, False, **kwargs) if response.status_code == HTTPBadGateway.code and status_code_mock: response.status_code = status_code_mock return response
[docs] def host_file(file_name): settings = get_settings(app) weaver_output_url = get_wps_output_url(settings) weaver_output_dir = get_wps_output_dir(settings) file_name = file_name.replace("file://", "") if not file_name.startswith(weaver_output_dir): raise Exception("Cannot host files outside of the output path : {0}".format(file_name)) return file_name.replace(weaver_output_dir, weaver_output_url)